PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 486521
Common NameARALYDRAFT_486521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 265aa    MW: 28985 Da    PI: 5.0204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
486521genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1875124255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  486521  75 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 124
             6*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1375124IPR001471AP2/ERF domain
PROSITE profilePS5103223.15675132IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2175132IPR016177DNA-binding domain
SMARTSM003806.0E-3675138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3175133IPR001471AP2/ERF domain
PRINTSPR003672.1E-107687IPR001471AP2/ERF domain
CDDcd000183.08E-3276134No hitNo description
PRINTSPR003672.1E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGKQINIESS ATHHQDNNVS VITASTVAAT ISSSVVTSSS ESWSTSKRSL VQDNGVGGKR  60
RKISNVSDDN KNPTSYRGVR MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL  120
AIKGNSGYLN FPELSGLLPR PVSCSPKDIQ AAATKAAEAT TWQKPIINEK LAEPEGDELS  180
HSELLSTAQS STSSCFVFSS DTSETSSTDK ESNEEKVFDL PDLFTDGLMN QNDAFCLCNG  240
TFTWQLYGED VGLRFEEPFN WQND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1676132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386460.0AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankAY5608480.0AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBankBT0294580.0BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876560.10.0hypothetical protein ARALYDRAFT_486521
SwissprotQ9M2101e-133ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLD7LRR00.0D7LRR0_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__2513__AT3G60490.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-118ERF family protein